HL_5OPT_018

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAACGACAUUCAGAAAC

Length

19 nucleotides

Bulged bases

5OPT|1|E|U|762, 5OPT|1|E|C|766

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|G|761
5OPT|1|E|U|762
5OPT|1|E|G|763
5OPT|1|E|A|764
5OPT|1|E|A|765
5OPT|1|E|C|766
5OPT|1|E|G|768
5OPT|1|E|A|769
5OPT|1|E|C|770
5OPT|1|E|A|771
5OPT|1|E|U|772
5OPT|1|E|U|773
5OPT|1|E|C|774
5OPT|1|E|A|775
5OPT|1|E|G|776
5OPT|1|E|A|777
5OPT|1|E|A|778
5OPT|1|E|A|779
5OPT|1|E|C|780

Current chains

Chain E

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S7, putative