HL_5OPT_020
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGACCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 5OPT|1|E|G|871, 5OPT|1|E|C|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OPT_020 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.2264
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5OPT|1|E|U|870
5OPT|1|E|G|871
5OPT|1|E|A|872
5OPT|1|E|C|873
5OPT|1|E|C|874
5OPT|1|E|A|875
5OPT|1|E|A|876
5OPT|1|E|A|877
5OPT|1|E|G|878
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S4
- Chain Y
- 40S ribosomal protein S24
- Chain b
- 40S ribosomal protein S9, putative
Coloring options: