HL_5OPT_021

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5OPT|1|E|C|887

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_021 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.5927

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

5OPT|1|E|C|883
5OPT|1|E|A|884
5OPT|1|E|U|885
5OPT|1|E|U|886
5OPT|1|E|C|887
5OPT|1|E|G|888

Current chains

Chain E

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S4

Chain Y

40S ribosomal protein S24