HL_5OPT_022

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCACCGUUUCGGCUUUUGUUGGUUUUAAAAG

Length

31 nucleotides

Bulged bases

5OPT|1|E|U|940, 5OPT|1|E|U|941

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|C|933
5OPT|1|E|C|934
5OPT|1|E|A|935
5OPT|1|E|C|936
5OPT|1|E|C|937
5OPT|1|E|G|938
5OPT|1|E|U|939
5OPT|1|E|U|940
5OPT|1|E|U|941
5OPT|1|E|C|942
5OPT|1|E|G|943
5OPT|1|E|G|944
5OPT|1|E|C|945
5OPT|1|E|U|946
5OPT|1|E|U|947
5OPT|1|E|U|948
5OPT|1|E|U|949
5OPT|1|E|G|950
5OPT|1|E|U|951
5OPT|1|E|U|952
5OPT|1|E|G|953
5OPT|1|E|G|954
5OPT|1|E|U|955
5OPT|1|E|U|956
5OPT|1|E|U|957
5OPT|1|E|U|958
5OPT|1|E|A|959
5OPT|1|E|A|960
5OPT|1|E|A|961
5OPT|1|E|A|962
5OPT|1|E|G|963

Current chains

Chain E

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S6

Chain X

40S ribosomal protein S11, putative

Chain Z

40S ribosomal protein S8