HL_5OPT_027

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUCAGCACGUU

Length

12 nucleotides

Bulged bases

5OPT|1|E|C|1525, 5OPT|1|E|G|1527

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|A|1385
5OPT|1|E|C|1523
5OPT|1|E|U|1524
5OPT|1|E|C|1525
5OPT|1|E|A|1526
5OPT|1|E|G|1527
5OPT|1|E|C|1528
5OPT|1|E|A|1529
5OPT|1|E|C|1530
5OPT|1|E|G|1531
5OPT|1|E|U|1532
5OPT|1|E|U|1533

Current chains

Chain E

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S27, putative

Chain W

40S ribosomal protein S3a-2

Chain f

40S ribosomal protein SA