HL_5OPT_035

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUGCG

Length

7 nucleotides

Bulged bases

5OPT|1|E|U|1913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_035 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2712

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5OPT|1|E|U|1911
5OPT|1|E|U|1912
5OPT|1|E|U|1913
5OPT|1|E|U|1914
5OPT|1|E|G|1915
5OPT|1|E|C|1916
5OPT|1|E|G|1917

Current chains

Chain E

18S rRNA

Nearby chains

Chain k

40S ribosomal protein S17, putative