HL_5OPT_037

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

5OPT|1|E|U|2091

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OPT_037 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.292

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5OPT|1|E|A|2083
5OPT|1|E|U|2084
5OPT|1|E|U|2085
5OPT|1|E|G|2086
5OPT|1|E|C|2087
5OPT|1|E|A|2088
5OPT|1|E|A|2089
5OPT|1|E|U|2090
5OPT|1|E|U|2091
5OPT|1|E|A|2092
5OPT|1|E|U|2093
5OPT|1|E|U|2094

Current chains

Chain E

18S rRNA

Nearby chains

Chain o

Ribosomal protein S19, putative

Chain t

40S ribosomal protein S15, putative

Chain u

40S ribosomal protein S18, putative