HL_5OPT_045

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUCCUGAUUAUCGCAUGUCAUGCAUGCCAGAG

Length

33 nucleotides

Bulged bases

5OPT|1|E|U|804, 5OPT|1|E|U|811, 5OPT|1|E|U|813, 5OPT|1|E|C|814, 5OPT|1|E|C|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OPT|1|E|U|802
5OPT|1|E|U|803
5OPT|1|E|U|804
5OPT|1|E|C|805
5OPT|1|E|C|806
5OPT|1|E|U|807
5OPT|1|E|G|808
5OPT|1|E|A|809
5OPT|1|E|U|810
5OPT|1|E|U|811
5OPT|1|E|A|812
5OPT|1|E|U|813
5OPT|1|E|C|814
5OPT|1|E|G|815
5OPT|1|E|C|816
5OPT|1|E|A|817
5OPT|1|E|U|818
5OPT|1|E|G|819
5OPT|1|E|U|820
5OPT|1|E|C|821
5OPT|1|E|A|822
5OPT|1|E|U|823
5OPT|1|E|G|824
5OPT|1|E|C|825
5OPT|1|E|A|826
5OPT|1|E|U|827
5OPT|1|E|G|828
5OPT|1|E|C|829
5OPT|1|E|C|830
5OPT|1|E|A|831
5OPT|1|E|G|832
5OPT|1|E|A|833
5OPT|1|E|G|834

Current chains

Chain E

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S6

Chain h

RNA-binding protein, putative