HL_5OQL_015

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCUGAGAAACGGC

Length

14 nucleotides

Bulged bases

5OQL|1|1|A|984, 5OQL|1|1|G|987

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OQL|1|1|G|976
5OQL|1|1|C|977
5OQL|1|1|C|978
5OQL|1|1|U|979
5OQL|1|1|G|980
5OQL|1|1|A|981
5OQL|1|1|G|982
5OQL|1|1|A|983
5OQL|1|1|A|984
5OQL|1|1|A|985
5OQL|1|1|C|986
5OQL|1|1|G|987
5OQL|1|1|G|988
5OQL|1|1|C|989

Current chains

Chain 1

35S rRNA

Nearby chains

Chain m

40S ribosomal protein S4

Chain o

40S ribosomal protein S6

Chain q

40S ribosomal protein S8