HL_5OQL_016

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5OQL|1|1|A|1000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_016 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2036

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5OQL|1|1|C|998
5OQL|1|1|C|999
5OQL|1|1|A|1000
5OQL|1|1|A|1001
5OQL|1|1|G|1002
5OQL|1|1|G|1003

Current chains

Chain 1

35S rRNA

Nearby chains

Chain i

RNA cytidine acetyltransferase

Chain o

40S ribosomal protein S6