HL_5OQL_017

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

5OQL|1|1|A|1036, 5OQL|1|1|A|1038

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_017 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1353

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5OQL|1|1|C|1034
5OQL|1|1|G|1035
5OQL|1|1|A|1036
5OQL|1|1|C|1037
5OQL|1|1|A|1038
5OQL|1|1|C|1039
5OQL|1|1|G|1040

Current chains

Chain 1

35S rRNA

Nearby chains

Chain m

40S ribosomal protein S4

Chain y

40S ribosomal protein S24