HL_5OQL_019
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAUUUAAAUCCCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5OQL_019 not in the Motif Atlas
- Homologous match to HL_4V88_199
- Geometric discrepancy: 0.1633
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5OQL|1|1|A|1104
5OQL|1|1|A|1105
5OQL|1|1|U|1106
5OQL|1|1|U|1107
5OQL|1|1|U|1108
5OQL|1|1|A|1109
5OQL|1|1|A|1110
5OQL|1|1|A|1111
5OQL|1|1|U|1112
5OQL|1|1|C|1113
5OQL|1|1|C|1114
5OQL|1|1|C|1115
5OQL|1|1|U|1116
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain Z
- Bms1
- Chain r
- 40S ribosomal protein s9-like protein
- Chain y
- 40S ribosomal protein S24
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