HL_5OQL_021

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACCUGAU

Length

7 nucleotides

Bulged bases

5OQL|1|1|U|1223

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_021 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2369

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5OQL|1|1|A|1220
5OQL|1|1|C|1221
5OQL|1|1|C|1222
5OQL|1|1|U|1223
5OQL|1|1|G|1443
5OQL|1|1|A|1444
5OQL|1|1|U|1445

Current chains

Chain 1

35S rRNA

Nearby chains

Chain p

40S ribosomal protein S7-like protein

Chain w

40S ribosomal protein S22-like protein