HL_5OQL_023

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_023 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.3948

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5OQL|1|1|C|1522
5OQL|1|1|G|1523
5OQL|1|1|A|1524
5OQL|1|1|A|1525
5OQL|1|1|A|1526
5OQL|1|1|G|1527

Current chains

Chain 1

35S rRNA

Nearby chains

Chain g

KRR1 small subunit processome component

Chain s

40S ribosomal protein S13-like protein