HL_5OQL_026

3D structure

PDB id

5OQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OQL_026 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.5329

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

5OQL|1|1|C|2084
5OQL|1|1|G|2085
5OQL|1|1|A|2086
5OQL|1|1|G|2087
5OQL|1|1|A|2088
5OQL|1|1|G|2089

Current chains

Chain 1

35S rRNA

Nearby chains

Chain H

U3 small nucleolar RNA-associated protein 11

Chain Q

Utp30

Chain Z

Bms1