HL_5OSG_003

3D structure

PDB id

5OSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Leishmania donovani 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUCAUGCA

Length

9 nucleotides

Bulged bases

5OSG|1|2|C|816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5OSG_003 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3044

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5OSG|1|2|U|813
5OSG|1|2|G|814
5OSG|1|2|U|815
5OSG|1|2|C|816
5OSG|1|2|A|817
5OSG|1|2|U|818
5OSG|1|2|G|819
5OSG|1|2|C|820
5OSG|1|2|A|821

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S6

Chain h

RNA binding protein, putative