HL_5T62_005
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 5T62|1|A|C|200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T62_005 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.1022
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
5T62|1|A|U|194
5T62|1|A|U|195
5T62|1|A|G|196
5T62|1|A|G|197
5T62|1|A|A|198
5T62|1|A|A|199
5T62|1|A|C|200
5T62|1|A|A|201
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain l
- 60S ribosomal protein L26-A
- Chain r
- 60S ribosomal protein L32
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