HL_5T62_010

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_010 not in the Motif Atlas

Homologous match to HL_5TBW_010

Geometric discrepancy: 0.0513

The information below is about HL_5TBW_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5T62|1|A|A|357
5T62|1|A|G|358
5T62|1|A|U|359
5T62|1|A|G|360
5T62|1|A|A|361
5T62|1|A|U|362

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L4-A

Chain w

60S ribosomal protein L37-A

Chain y

60S ribosomal protein L39