HL_5T62_034
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUGAUUUUAUGCAGG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T62|1|A|C|1562
5T62|1|A|C|1563
5T62|1|A|U|1564
5T62|1|A|G|1565
5T62|1|A|A|1566
5T62|1|A|U|1567
5T62|1|A|U|1568
5T62|1|A|U|1569
5T62|1|A|U|1570
5T62|1|A|A|1571
5T62|1|A|U|1572
5T62|1|A|G|1573
5T62|1|A|C|1574
5T62|1|A|A|1575
5T62|1|A|G|1576
5T62|1|A|G|1577
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- 60S ribosomal protein L8-A
- Chain k
- 60S ribosomal protein L25
Coloring options: