HL_5T62_043

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5T62|1|A|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_043 not in the Motif Atlas

Homologous match to HL_5TBW_043

Geometric discrepancy: 0.1378

The information below is about HL_5TBW_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5T62|1|A|C|1923
5T62|1|A|U|1924
5T62|1|A|U|1925
5T62|1|A|C|1926
5T62|1|A|G|1927
5T62|1|A|G|1928

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L43-A

Chain W

Large subunit GTPase 1