HL_5T62_049

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAC(PSU)A(PSU)GAC(PSU)C

Length

15 nucleotides

Bulged bases

5T62|1|A|A|2255, 5T62|1|A|G|2261

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T62|1|A|G|2251
5T62|1|A|A|2252
5T62|1|A|G|2253
5T62|1|A|U|2254
5T62|1|A|A|2255
5T62|1|A|A|2256
5T62|1|A|C|2257
5T62|1|A|PSU|2258
5T62|1|A|A|2259
5T62|1|A|PSU|2260
5T62|1|A|G|2261
5T62|1|A|A|2262
5T62|1|A|C|2263
5T62|1|A|PSU|2264
5T62|1|A|C|2265

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain V

60S ribosomal export protein NMD3

Chain W

Large subunit GTPase 1