HL_5T62_073

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_073 not in the Motif Atlas

Homologous match to HL_5TBW_185

Geometric discrepancy: 0.1078

The information below is about HL_5TBW_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83767.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

5T62|1|B|C|36
5T62|1|B|G|37
5T62|1|B|U|38
5T62|1|B|C|39
5T62|1|B|C|40
5T62|1|B|G|41

Current chains

Chain B

5S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain G

60S ribosomal protein L5

Chain M

60S ribosomal protein L11-A