Loop HL_5T62

3D structure

PDB id: 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUU
Length: 53 nucleotides
Bulged bases: 5T62|1|A|G|2452, 5T62|1|A|U|2453, 5T62|1|A|A|2458, 5T62|1|A|U|2460, 5T62|1|A|U|2472, 5T62|1|A|C|2473
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5T62|1|A|A|2447
5T62|1|A|G|2448
5T62|1|A|A|2449
5T62|1|A|G|2450
5T62|1|A|G|2451
5T62|1|A|G|2452
5T62|1|A|U|2453
5T62|1|A|G|2454
5T62|1|A|U|2455
5T62|1|A|A|2456
5T62|1|A|G|2457
5T62|1|A|A|2458
5T62|1|A|A|2459
5T62|1|A|U|2460
5T62|1|A|A|2461
5T62|1|A|A|2462
5T62|1|A|G|2463
5T62|1|A|U|2464
5T62|1|A|G|2465
5T62|1|A|G|2466
5T62|1|A|G|2467
5T62|1|A|A|2468
5T62|1|A|G|2469
5T62|1|A|C|2470
5T62|1|A|U|2471
5T62|1|A|U|2472
5T62|1|A|C|2473
5T62|1|A|G|2474
5T62|1|A|G|2475
5T62|1|A|C|2476
5T62|1|A|G|2477
5T62|1|A|C|2478
5T62|1|A|C|2479
5T62|1|A|A|2480
5T62|1|A|G|2481
5T62|1|A|U|2482
5T62|1|A|G|2483
5T62|1|A|A|2484
5T62|1|A|A|2485
5T62|1|A|A|2486
5T62|1|A|U|2487
5T62|1|A|A|2488
5T62|1|A|C|2489
5T62|1|A|C|2490
5T62|1|A|A|2491
5T62|1|A|C|2492
5T62|1|A|U|2493
5T62|1|A|A|2494
5T62|1|A|C|2495
5T62|1|A|C|2496
5T62|1|A|U|2497
5T62|1|A|U|2498
5T62|1|A|U|2499

Current chains

Chain A: 25S Ribosomal RNA

Nearby chains

Chain S: Ribosomal Protein uL1
Chain V: 60S ribosomal export protein NMD3

HL_5T62_078