HL_5T6R_003
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T6R_003 not in the Motif Atlas
- Homologous match to HL_5TBW_003
- Geometric discrepancy: 0.086
- The information below is about HL_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
5T6R|1|A|C|90
5T6R|1|A|G|91
5T6R|1|A|G|92
5T6R|1|A|C|93
5T6R|1|A|G|94
5T6R|1|A|A|95
5T6R|1|A|G|96
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L42-A
- Chain d
- 60S ribosomal protein L18-A
- Chain n
- 60S ribosomal protein L28
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