HL_5T6R_028

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_028 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.1652

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5T6R|1|A|G|1266
5T6R|1|A|U|1267
5T6R|1|A|G|1268
5T6R|1|A|U|1269
5T6R|1|A|A|1270
5T6R|1|A|A|1271
5T6R|1|A|C|1272
5T6R|1|A|A|1273
5T6R|1|A|A|1274
5T6R|1|A|C|1275

Current chains

Chain A

25S Ribosomal RNA

Nearby chains