HL_5T6R_034

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAUUUUAUGCA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T6R|1|A|U|1564
5T6R|1|A|G|1565
5T6R|1|A|A|1566
5T6R|1|A|U|1567
5T6R|1|A|U|1568
5T6R|1|A|U|1569
5T6R|1|A|U|1570
5T6R|1|A|A|1571
5T6R|1|A|U|1572
5T6R|1|A|G|1573
5T6R|1|A|C|1574
5T6R|1|A|A|1575

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA