HL_5T6R_036

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_036 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0802

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5T6R|1|A|G|1634
5T6R|1|A|G|1635
5T6R|1|A|U|1636
5T6R|1|A|A|1637
5T6R|1|A|A|1638
5T6R|1|A|C|1639

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain m

60S ribosomal protein L27-A

Chain t

60S ribosomal protein L34-A