HL_5T6R_047

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

5T6R|1|A|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_047 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.098

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5T6R|1|A|A|2164
5T6R|1|A|G|2165
5T6R|1|A|A|2166
5T6R|1|A|A|2167
5T6R|1|A|A|2168
5T6R|1|A|G|2169
5T6R|1|A|U|2170

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L8-A

Chain a

60S ribosomal protein L15-A