HL_5T6R_052

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

5T6R|1|A|U|2472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T6R|1|A|G|2469
5T6R|1|A|C|2470
5T6R|1|A|U|2471
5T6R|1|A|U|2472
5T6R|1|A|C|2473
5T6R|1|A|G|2474
5T6R|1|A|G|2475
5T6R|1|A|C|2476

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain S

Ribosomal Protein uL1