HL_5T6R_053

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

5T6R|1|A|C|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T6R|1|A|G|2534
5T6R|1|A|A|2535
5T6R|1|A|A|2536
5T6R|1|A|U|2537
5T6R|1|A|U|2538
5T6R|1|A|C|2539
5T6R|1|A|A|2540
5T6R|1|A|U|2541
5T6R|1|A|U|2542
5T6R|1|A|U|2543
5T6R|1|A|U|2544
5T6R|1|A|C|2545

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L8-A