HL_5T6R_055
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5T6R|1|A|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T6R_055 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.1221
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5T6R|1|A|C|2616
5T6R|1|A|U|2617
5T6R|1|A|G|2618
5T6R|1|A|G|2619
5T6R|1|A|G|2620
5T6R|1|A|G|2621
5T6R|1|A|C|2622
5T6R|1|A|G|2623
5T6R|1|A|G|2624
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L10
- Chain V
- Maltose binding protein, 60S ribosomal export protein Nmd3 fusion
- Chain o
- 60S ribosomal protein L29
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