HL_5T6R_071

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

5T6R|1|A|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0698

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

5T6R|1|A|G|3303
5T6R|1|A|U|3304
5T6R|1|A|A|3305
5T6R|1|A|U|3306
5T6R|1|A|A|3307
5T6R|1|A|C|3308
5T6R|1|A|G|3309
5T6R|1|A|A|3310
5T6R|1|A|C|3311

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain c

60S ribosomal protein L17-A