HL_5T6R_079

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

5T6R|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T6R|1|A|A|1679
5T6R|1|A|G|1680
5T6R|1|A|U|1681
5T6R|1|A|U|1682
5T6R|1|A|A|1683
5T6R|1|A|U|1684
5T6R|1|A|C|1685
5T6R|1|A|U|1686
5T6R|1|A|U|1687
5T6R|1|A|U|1688
5T6R|1|A|U|1689

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L19-A

Chain h

60S ribosomal protein L22-A