Loop HL_5T6R

3D structure

PDB id: 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
Description: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Loop

Sequence: AGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUU
Length: 53 nucleotides
Bulged bases: 5T6R|1|A|G|2452, 5T6R|1|A|U|2453, 5T6R|1|A|A|2458, 5T6R|1|A|U|2460, 5T6R|1|A|A|2468, 5T6R|1|A|U|2472, 5T6R|1|A|C|2473
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5T6R|1|A|A|2447
5T6R|1|A|G|2448
5T6R|1|A|A|2449
5T6R|1|A|G|2450
5T6R|1|A|G|2451
5T6R|1|A|G|2452
5T6R|1|A|U|2453
5T6R|1|A|G|2454
5T6R|1|A|U|2455
5T6R|1|A|A|2456
5T6R|1|A|G|2457
5T6R|1|A|A|2458
5T6R|1|A|A|2459
5T6R|1|A|U|2460
5T6R|1|A|A|2461
5T6R|1|A|A|2462
5T6R|1|A|G|2463
5T6R|1|A|U|2464
5T6R|1|A|G|2465
5T6R|1|A|G|2466
5T6R|1|A|G|2467
5T6R|1|A|A|2468
5T6R|1|A|G|2469
5T6R|1|A|C|2470
5T6R|1|A|U|2471
5T6R|1|A|U|2472
5T6R|1|A|C|2473
5T6R|1|A|G|2474
5T6R|1|A|G|2475
5T6R|1|A|C|2476
5T6R|1|A|G|2477
5T6R|1|A|C|2478
5T6R|1|A|C|2479
5T6R|1|A|A|2480
5T6R|1|A|G|2481
5T6R|1|A|U|2482
5T6R|1|A|G|2483
5T6R|1|A|A|2484
5T6R|1|A|A|2485
5T6R|1|A|A|2486
5T6R|1|A|U|2487
5T6R|1|A|A|2488
5T6R|1|A|C|2489
5T6R|1|A|C|2490
5T6R|1|A|A|2491
5T6R|1|A|C|2492
5T6R|1|A|U|2493
5T6R|1|A|A|2494
5T6R|1|A|C|2495
5T6R|1|A|C|2496
5T6R|1|A|U|2497
5T6R|1|A|U|2498
5T6R|1|A|U|2499

Current chains

Chain A: 25S Ribosomal RNA

Nearby chains

Chain S: Ribosomal Protein uL1
Chain V: Maltose binding protein, 60S ribosomal export protein Nmd3 fusion

HL_5T6R_080