HL_5T7V_025

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_025 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.3737

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5T7V|1|A|C|1324
5T7V|1|A|U|1325
5T7V|1|A|G|1326
5T7V|1|A|C|1327
5T7V|1|A|A|1328
5T7V|1|A|A|1329
5T7V|1|A|C|1330
5T7V|1|A|U|1331
5T7V|1|A|C|1332
5T7V|1|A|G|1333

Current chains

Chain A

16S ribosomal RNA

Nearby chains