HL_5T7V_041

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5T7V|1|B|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_041 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.2558

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5T7V|1|B|G|456
5T7V|1|B|G|457
5T7V|1|B|A|458
5T7V|1|B|C|459
5T7V|1|B|C|460
5T7V|1|B|A|461
5T7V|1|B|U|462
5T7V|1|B|C|463

Current chains

Chain B

23S ribosomal RNA

Nearby chains