HL_5T7V_059

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

5T7V|1|B|C|1362, 5T7V|1|B|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_059 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1691

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5T7V|1|B|G|1361
5T7V|1|B|C|1362
5T7V|1|B|U|1363
5T7V|1|B|C|1364
5T7V|1|B|G|1365
5T7V|1|B|U|1366
5T7V|1|B|C|1367

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain LQ

50S ribosomal protein L17