HL_5T7V_081

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_081 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.163

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5T7V|1|B|C|2382
5T7V|1|B|C|2383
5T7V|1|B|U|2384
5T7V|1|B|A|2385
5T7V|1|B|C|2386
5T7V|1|B|A|2387
5T7V|1|B|A|2388
5T7V|1|B|G|2389

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L9

50S ribosomal protein L27

Chain LH

50S ribosomal protein L35

Chain LO

50S ribosomal protein L15