HL_5T83_002

3D structure

PDB id

5T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a guanidine-I riboswitch from S. acidophilus

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

UUUCACAAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Guanidine riboswitch aptamer P2 hairpin

Broad Annotation

Guanidine riboswitch aptamer P2 hairpin

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

5T83|1|A|U|56
5T83|1|A|U|57
5T83|1|A|U|58
5T83|1|A|C|59
5T83|1|A|A|60
5T83|1|A|C|61
5T83|1|A|A|62
5T83|1|A|A|63
5T83|1|A|A|64

Current chains

Chain A

RNA (95-MER)

Nearby chains