HL_5TBW_001

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases (A, C, G, U)

40A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.3

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

5TBW|1|1|U|38
5TBW|1|1|A|39
5TBW|1|1|A|40
5TBW|1|1|G|41
5TBW|1|1|C|42
5TBW|1|1|A|43
5TBW|1|1|U|44
5TBW|1|1|A|45

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A