HL_5TBW_007

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

5TBW|1|1|G|218, 5TBW|1|1|A|219, 5TBW|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08002.10

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

5TBW|1|1|G|216
5TBW|1|1|U|217
5TBW|1|1|G|218
5TBW|1|1|A|219
5TBW|1|1|G|220
5TBW|1|1|A|221
5TBW|1|1|A|222
5TBW|1|1|U|223
5TBW|1|1|C|224

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

60S ribosomal protein L26-A

Chain l

60S ribosomal protein L4-A