3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UCUUGAAACA
Length
10 nucleotides
Bulged bases
5TBW|1|1|C|648
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

5TBW|1|1|U|640
5TBW|1|1|C|641
5TBW|1|1|U|642
5TBW|1|1|U|643
5TBW|1|1|G|644
5TBW|1|1|A|645
5TBW|1|1|A|646
5TBW|1|1|A|647
5TBW|1|1|C|648
5TBW|1|1|A|649

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AB
60S ribosomal protein L28
Chain AF
60S ribosomal protein L32
Chain k
60S ribosomal protein L3

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.5967 s