HL_5TBW_029

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

5TBW|1|1|G|1354, 5TBW|1|1|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01763.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5TBW|1|1|U|1347
5TBW|1|1|U|1348
5TBW|1|1|G|1349
5TBW|1|1|A|1350
5TBW|1|1|U|1351
5TBW|1|1|A|1352
5TBW|1|1|U|1353
5TBW|1|1|G|1354
5TBW|1|1|A|1355
5TBW|1|1|U|1356
5TBW|1|1|G|1357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-A

Chain n

60S ribosomal protein L6-A

Chain y

60S ribosomal protein L18-A