3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUGAGAACU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

5TBW|1|1|A|1462
5TBW|1|1|U|1463
5TBW|1|1|G|1464
5TBW|1|1|A|1465
5TBW|1|1|G|1466
5TBW|1|1|A|1467
5TBW|1|1|A|1468
5TBW|1|1|C|1469
5TBW|1|1|U|1470

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AE
60S ribosomal protein L31-A
Chain x
60S ribosomal protein L17-A
Chain z
60S ribosomal protein L19-A

Coloring options:

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