HL_5TBW_042

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

5TBW|1|1|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA with one bulged base

Broad Annotation

GNRA

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

5TBW|1|1|U|1862
5TBW|1|1|G|1863
5TBW|1|1|A|1864
5TBW|1|1|A|1865
5TBW|1|1|C|1866
5TBW|1|1|A|1867
5TBW|1|1|G|1868

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain z

60S ribosomal protein L19-A