HL_5TBW_047

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases (A, C, G, U)

2169G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

5TBW|1|1|A|2164
5TBW|1|1|G|2165
5TBW|1|1|A|2166
5TBW|1|1|A|2167
5TBW|1|1|A|2168
5TBW|1|1|G|2169
5TBW|1|1|U|2170

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L8-A

Chain v

60S ribosomal protein L15-A