HL_5TBW_058

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5TBW|1|1|U|2724
5TBW|1|1|U|2725
5TBW|1|1|C|2726
5TBW|1|1|A|2727
5TBW|1|1|G|2728
5TBW|1|1|U|2729
5TBW|1|1|G|2730
5TBW|1|1|U|2731
5TBW|1|1|G|2732

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-A

Chain y

60S ribosomal protein L18-A