HL_5TBW_060

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

5TBW|1|1|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

5TBW|1|1|C|2776
5TBW|1|1|G|2777
5TBW|1|1|G|2778
5TBW|1|1|A|2779
5TBW|1|1|A|2780
5TBW|1|1|U|2781
5TBW|1|1|U|2782
5TBW|1|1|U|2783
5TBW|1|1|G|2784

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AJ

60S ribosomal protein L36-A

Chain AP

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A