3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CACAUUG
Length
7 nucleotides
Bulged bases (A, C, G, U)
111A, 113U
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_83767.1
Basepair signature
cWW-F-F
Number of instances in this motif group
11

Unit IDs

5TBW|1|4|C|108
5TBW|1|4|A|109
5TBW|1|4|C|110
5TBW|1|4|A|111
5TBW|1|4|U|112
5TBW|1|4|U|113
5TBW|1|4|G|114

Current chains

Chain 4
5.8S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 8
60S ribosomal protein L25
Chain AK
60S ribosomal protein L37-A
Chain AM
60S ribosomal protein L39

Coloring options:

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