HL_5TBW_107

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_107 not in the Motif Atlas

Geometric match to HL_5J7L_026

Geometric discrepancy: 0.2386

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5TBW|1|A|U|1396
5TBW|1|A|U|1397
5TBW|1|A|U|1398
5TBW|1|A|C|1399
5TBW|1|A|A|1400
5TBW|1|A|A|1401
5TBW|1|A|G|1402

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S17-A

Chain d

40S ribosomal protein S28-A